Learning Natural Selection from the Site Frequency Spectrum
نویسندگان
چکیده
منابع مشابه
Learning Natural Selection from the Site Frequency Spectrum
Genetic adaptation to external stimuli occurs through the combined action of mutation and selection. A central problem in genetics is to identify loci responsive to specific selective constraints. Many tests have been proposed to identify the genomic signatures of natural selection by quantifying the skew in the site frequency spectrum (SFS) under selection relative to neutrality. We build upon...
متن کاملLearning Natural Selection from the Site Frequency Spectrum A Letter Submitted to Genetics
Genetic adaptation to external stimuli occurs through the combined action of mutation and selection. A central problem in genetics is to identify loci responsive to specific selective constraints. Many tests have been proposed to identify the genomic signatures of natural selection by quantifying the skew in the site frequency spectrum (SFS) under selection relative to neutrality. We build upon...
متن کاملDirectional selection and the site-frequency spectrum.
In this article we explore statistical properties of the maximum-likelihood estimates (MLEs) of the selection and mutation parameters in a Poisson random field population genetics model of directional selection at DNA sites. We derive the asymptotic variances and covariance of the MLEs and explore the power of the likelihood ratio tests (LRT) of neutrality for varying levels of mutation and sel...
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The distribution of genetic polymorphisms in a population contains information about the mutation rate and the strength of natural selection at a locus. Here, we show that the Poisson Random Field (PRF) method of population-genetic inference suffers from systematic biases that tend to underestimate selection pressures and mutation rates, and that erroneously infer positive selection. These prob...
متن کاملThe site frequency spectrum of dispensable genes.
The differences between DNA-sequences within a population are the basis to infer the ancestral relationship of the individuals. Within the classical infinitely many sites model, it is possible to estimate the mutation rate based on the site frequency spectrum, which is comprised by the numbers C1,…,Cn-1 where n is the sample size and Cs is the number of site mutations (Single Nucleotide Polymor...
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ژورنال
عنوان ژورنال: Genetics
سال: 2013
ISSN: 1943-2631
DOI: 10.1534/genetics.113.152587